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LOC120830580 secreted frizzled-related protein 1-like [ Gasterosteus aculeatus (three-spined stickleback) ]

Gene ID: 120830580, updated on 18-Jun-2024

Summary

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Gene symbol
LOC120830580
Gene description
secreted frizzled-related protein 1-like
See related
Ensembl:ENSGACG00000005508
Gene type
protein coding
RefSeq status
MODEL
Organism
Gasterosteus aculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
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Genomic context

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See LOC120830580 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
100 current GAculeatus_UGA_version5 (GCF_016920845.1) 13 NC_053224.1 (3725248..3735867)

Chromosome 13 - NC_053224.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120831384 Neighboring gene golgin A7 Neighboring gene zinc finger, matrin-type 4a Neighboring gene transcriptional and immune response regulator a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053224.1 Chromosome 13 Reference GAculeatus_UGA_version5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Wnt-protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
secreted frizzled-related protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GAculeatus_UGA_version5 Primary Assembly

Genomic

  1. NC_053224.1 Reference GAculeatus_UGA_version5 Primary Assembly

    Range
    3725248..3735867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040195334.1 → XP_040051268.1  secreted frizzled-related protein 1-like

    UniProtKB/TrEMBL
    G3NPL5
    Related
    ENSGACP00000007279.2, ENSGACT00000007297.2
    Conserved Domains (2) summary
    cd03580
    Location:179 → 301
    NTR_Sfrp1_like; NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse ...
    cl02447
    Location:45 → 168
    CRD_FZ; CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain
Nucleotide Protein Strain
Heading Accession and Version

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