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LOC120827374 beta-1,3-galactosyltransferase 1-like [ Gasterosteus aculeatus (three-spined stickleback) ]

Gene ID: 120827374, updated on 18-Jun-2024

Summary

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Gene symbol
LOC120827374
Gene description
beta-1,3-galactosyltransferase 1-like
See related
Ensembl:ENSGACG00000036689
Gene type
protein coding
RefSeq status
MODEL
Organism
Gasterosteus aculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
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Genomic context

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See LOC120827374 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
100 current GAculeatus_UGA_version5 (GCF_016920845.1) 1 NC_053212.1 (27413155..27473627, complement)

Chromosome 1 - NC_053212.1Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 7-like Neighboring gene uncharacterized LOC120827231 Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 11b Neighboring gene xin actin binding repeat containing 2a Neighboring gene cysteine/serine-rich nuclear protein 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053212.1 Chromosome 1 Reference GAculeatus_UGA_version5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GAculeatus_UGA_version5 Primary Assembly

Genomic

  1. NC_053212.1 Reference GAculeatus_UGA_version5 Primary Assembly

    Range
    27413155..27473627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040190507.1 → XP_040046441.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    G3PLB4
    Related
    ENSGACP00000007091.2, ENSGACT00000007109.2
    Conserved Domains (1) summary
    pfam01762
    Location:94 → 281
    Galactosyl_T; Galactosyltransferase

  2. XM_040190596.1 → XP_040046530.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    G3PLB4
    Related
    ENSGACP00000018394.1, ENSGACT00000018430.2
    Conserved Domains (1) summary
    pfam01762
    Location:94 → 281
    Galactosyl_T; Galactosyltransferase

  3. XM_040190419.1 → XP_040046353.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    G3PLB4
    Related
    ENSGACP00000035241.1, ENSGACT00000060665.1
    Conserved Domains (1) summary
    pfam01762
    Location:94 → 281
    Galactosyl_T; Galactosyltransferase

  4. XM_040190251.1 → XP_040046185.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    G3PLB4
    Related
    ENSGACP00000034234.1, ENSGACT00000075353.1
    Conserved Domains (1) summary
    pfam01762
    Location:94 → 281
    Galactosyl_T; Galactosyltransferase

  5. XM_040190680.1 → XP_040046614.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    G3PLB4
    Related
    ENSGACP00000053386.1, ENSGACT00000080032.1
    Conserved Domains (1) summary
    pfam01762
    Location:94 → 281
    Galactosyl_T; Galactosyltransferase

  6. XM_040190333.1 → XP_040046267.1  beta-1,3-galactosyltransferase 1-like

    UniProtKB/TrEMBL
    G3PLB4
    Related
    ENSGACP00000061526.1, ENSGACT00000078557.1
    Conserved Domains (1) summary
    pfam01762
    Location:94 → 281
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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