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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Gasterosteus aculeatus (three-spined stickleback) ]

Gene ID: 120822312, updated on 10-Oct-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
Ensembl:ENSGACG00000020815
Gene type
protein coding
RefSeq status
MODEL
Organism
Gasterosteus aculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
100 current GAculeatus_UGA_version5 (GCF_016920845.1) 7 NC_053218.1 (28248606..28383575, complement)

Chromosome 7 - NC_053218.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene cornifelin homolog B-like Neighboring gene heart- and neural crest derivatives-expressed protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053218.1 Chromosome 7 Reference GAculeatus_UGA_version5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GAculeatus_UGA_version5 Primary Assembly

Genomic

  1. NC_053218.1 Reference GAculeatus_UGA_version5 Primary Assembly

    Range
    28248606..28383575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040181888.1 → XP_040037822.1  delta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0AAQ4Q2W5
    Related
    ENSGACP00000027519.2, ENSGACT00000027571.2

  2. XM_040181887.1 → XP_040037821.1  delta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0AAQ4Q2W5
    Related
    ENSGACP00000028213.1, ENSGACT00000036002.1

  3. XM_040181885.1 → XP_040037819.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0AAQ4Q2W5, A0AAQ4S715
    Related
    ENSGACP00000070952.1, ENSGACT00000066405.1

  4. XM_040181884.1 → XP_040037818.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0AAQ4NPI5, A0AAQ4R130
    Related
    ENSGACP00000057279.1, ENSGACT00000047699.1

  5. XM_040181886.1 → XP_040037820.1  delta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0AAQ4Q2W5, G3QCA3
    Related
    ENSGACP00000045400.1, ENSGACT00000063901.1
Nucleotide Protein Strain
Heading Accession and Version

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