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LOC120813001 aspartyl/asparaginyl beta-hydroxylase-like [ Gasterosteus aculeatus (three-spined stickleback) ]

Gene ID: 120813001, updated on 10-Oct-2024

Summary

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Gene symbol
LOC120813001
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
See related
Ensembl:ENSGACG00000023637
Gene type
protein coding
RefSeq status
MODEL
Organism
Gasterosteus aculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
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Genomic context

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See LOC120813001 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current GAculeatus_UGA_version5 (GCF_016920845.1) Unplaced Scaffold NW_024397097.1 (3709..11884, complement)

NW_024397097.1Genomic Context describing neighboring genes Neighboring gene un-named hu7910

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024397097 Unplaced Scaffold Reference GAculeatus_UGA_version5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like; uncharacterized protein LOC120813001

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GAculeatus_UGA_version5 Primary Assembly

Genomic

  1. NW_024397097.1 Reference GAculeatus_UGA_version5 Primary Assembly

    Range
    3709..11884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040169154.1 → XP_040025088.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X6

    Conserved Domains (1) summary
    pfam05279
    Location:115 → 216
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  2. XM_040169153.1 → XP_040025087.1  uncharacterized protein LOC120813001 isoform X5

    Conserved Domains (1) summary
    pfam05279
    Location:115 → 208
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  3. XM_040169155.1 → XP_040025089.1  uncharacterized protein LOC120813001 isoform X7

    Conserved Domains (1) summary
    pfam05279
    Location:115 → 186
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  4. XM_040169156.1 → XP_040025090.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X8

    UniProtKB/TrEMBL
    A0AAQ4R0A7
    Related
    ENSGACP00000056057.1, ENSGACT00000041415.1
    Conserved Domains (1) summary
    pfam05279
    Location:43 → 212
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  5. XM_040169149.1 → XP_040025083.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

    UniProtKB/TrEMBL
    A0AAQ4PUS3
    Conserved Domains (1) summary
    pfam05279
    Location:115 → 284
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  6. XM_040169150.1 → XP_040025084.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

    UniProtKB/TrEMBL
    A0AAQ4PUS3
    Conserved Domains (1) summary
    pfam05279
    Location:112 → 281
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  7. XM_040169152.1 → XP_040025086.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

    UniProtKB/TrEMBL
    A0AAQ4P5R2
    Related
    ENSGACP00000034309.1, ENSGACT00000065703.1
    Conserved Domains (1) summary
    pfam05279
    Location:91 → 260
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  8. XM_040169151.1 → XP_040025085.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

    UniProtKB/TrEMBL
    A0AAQ4PUS3
    Related
    ENSGACP00000042472.1, ENSGACT00000040744.1
    Conserved Domains (1) summary
    pfam05279
    Location:115 → 269
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein Strain
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