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kirrel3l kirre like nephrin family adhesion molecule 3, like [ Gasterosteus aculeatus (three-spined stickleback) ]

Gene ID: 120811116, updated on 18-Jun-2024

Summary

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Gene symbol
kirrel3l
Gene description
kirre like nephrin family adhesion molecule 3, like
See related
Ensembl:ENSGACG00000007687
Gene type
protein coding
RefSeq status
MODEL
Organism
Gasterosteus aculeatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Cottioidei; Gasterosteales; Gasterosteidae; Gasterosteus
Orthologs
human zebrafish all
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Genomic context

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See kirrel3l in Genome Data Viewer
Location:
chromosome: 20
Exon count:
15
Annotation release Status Assembly Chr Location
100 current GAculeatus_UGA_version5 (GCF_016920845.1) 20 NC_053231.1 (10456624..10488625)

Chromosome 20 - NC_053231.1Genomic Context describing neighboring genes Neighboring gene uncharacterized si:dkey-262k9.2 Neighboring gene FXYD domain containing ion transport regulator 5 Neighboring gene NPHS1 adhesion molecule, nephrin Neighboring gene uncharacterized LOC120811153 Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene amyloid beta (A4) precursor-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053231.1 Chromosome 20 Reference GAculeatus_UGA_version5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kirre like nephrin family adhesion molecule 3, like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gasterosteus aculeatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GAculeatus_UGA_version5 Primary Assembly

Genomic

  1. NC_053231.1 Reference GAculeatus_UGA_version5 Primary Assembly

    Range
    10456624..10488625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040166284.1 → XP_040022218.1  kirre like nephrin family adhesion molecule 3, like isoform X1

    UniProtKB/TrEMBL
    G3NXZ8
    Conserved Domains (4) summary
    smart00408
    Location:124 → 204
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:312 → 387
    IG; Immunoglobulin
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain

  2. XM_040166286.1 → XP_040022220.1  kirre like nephrin family adhesion molecule 3, like isoform X2

    UniProtKB/TrEMBL
    G3NXZ3, G3NXZ8
    Related
    ENSGACP00000010213.2, ENSGACT00000010235.2
    Conserved Domains (4) summary
    smart00408
    Location:124 → 204
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:312 → 387
    IG; Immunoglobulin
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cl11960
    Location:389 → 486
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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