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kirrel1a kirre like nephrin family adhesion molecule 1a [ Xiphias gladius (swordfish) ]

Gene ID: 120797389, updated on 8-May-2024

Summary

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Gene symbol
kirrel1a
Gene description
kirre like nephrin family adhesion molecule 1a
See related
EnsemblRapid:ENSXGLG00000020350
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
Orthologs
zebrafish all
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Genomic context

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See kirrel1a in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 12 NC_053411.1 (4735821..4766837, complement)

Chromosome 12 - NC_053411.1Genomic Context describing neighboring genes Neighboring gene Fc epsilon receptor IgFc epsilon receptor Ig Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene uncharacterized LOC120797091 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053411.1 Chromosome 12 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053411.1 Reference ASM1685928v1 Primary Assembly

    Range
    4735821..4766837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040141018.1 → XP_039996952.1  kin of IRRE-like protein 1a

    Related
    ENSXGLP00000058359.1, ENSXGLT00000060707.1
    Conserved Domains (4) summary
    smart00408
    Location:134 → 202
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:312 → 387
    IG; Immunoglobulin
    cd00096
    Location:390 → 394
    Ig; Ig strand A [structural motif]
    cl11960
    Location:389 → 492
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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