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capn3a calpain 3a, (p94) [ Xiphias gladius (swordfish) ]

Gene ID: 120795487, updated on 8-May-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
See related
EnsemblRapid:ENSXGLG00000015783
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: 10
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 10 NC_053409.1 (22452061..22468129)

Chromosome 10 - NC_053409.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A-like Neighboring gene uncharacterized LOC120795519 Neighboring gene glucosidase, alpha; neutral C Neighboring gene zinc finger protein 106a Neighboring gene uncharacterized LOC120795084

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053409.1 Chromosome 10 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053409.1 Reference ASM1685928v1 Primary Assembly

    Range
    22452061..22468129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040137425.1 → XP_039993359.1  calpain-3

    Related
    ENSXGLP00000047089.1, ENSXGLT00000048296.1
    Conserved Domains (4) summary
    smart00230
    Location:37 → 365
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:367 → 524
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd15897
    Location:549 → 577
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:549 → 717
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

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