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sgca sarcoglycan, alpha [ Xiphias gladius (swordfish) ]

Gene ID: 120794053, updated on 8-May-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
EnsemblRapid:ENSXGLG00000012816
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 9 NC_053408.1 (5634619..5642376, complement)

Chromosome 9 - NC_053408.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120794797 Neighboring gene collagen, type I, alpha 1b Neighboring gene neurabin-2-like Neighboring gene PR domain containing 9 Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053408.1 Chromosome 9 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053408.1 Reference ASM1685928v1 Primary Assembly

    Range
    5634619..5642376 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040134643.1 → XP_039990577.1  alpha-sarcoglycan

    Related
    ENSXGLP00000037959.1, ENSXGLT00000038795.1
    Conserved Domains (1) summary
    pfam05510
    Location:29 → 349
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_040134642.1 → XP_039990576.1  alpha-sarcoglycan

    Conserved Domains (1) summary
    pfam05510
    Location:29 → 349
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

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