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b4galnt3b beta-1,4-N-acetyl-galactosaminyl transferase 3b [ Xiphias gladius (swordfish) ]

Gene ID: 120792688, updated on 8-May-2024

Summary

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Gene symbol
b4galnt3b
Gene description
beta-1,4-N-acetyl-galactosaminyl transferase 3b
See related
EnsemblRapid:ENSXGLG00000009776
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
Orthologs
zebrafish all
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Genomic context

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See b4galnt3b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 8 NC_053407.1 (15836599..15856296, complement)

Chromosome 8 - NC_053407.1Genomic Context describing neighboring genes Neighboring gene C2 calcium dependent domain containing 5 Neighboring gene troponin I, skeletal, slow c Neighboring gene FKBP prolyl isomerase 4 Neighboring gene DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 Neighboring gene WAS protein family homolog 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053407.1 Chromosome 8 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-N-acetylgalactosaminyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053407.1 Reference ASM1685928v1 Primary Assembly

    Range
    15836599..15856296 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040131926.1 → XP_039987860.1  beta-1,4-N-acetylgalactosaminyltransferase 3

    Related
    ENSXGLP00000028925.1, ENSXGLT00000029505.1
    Conserved Domains (3) summary
    cd00761
    Location:897 → 1074
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    pfam17380
    Location:458 → 731
    DUF5401; Family of unknown function (DUF5401)
    cl08459
    Location:107 → 251
    PA14; PA14 domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases