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chpf2 chondroitin polymerizing factor 2 [ Xiphias gladius (swordfish) ]

Gene ID: 120790257, updated on 8-May-2024

Summary

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Gene symbol
chpf2
Gene description
chondroitin polymerizing factor 2
See related
EnsemblRapid:ENSXGLG00000009649
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
Orthologs
human zebrafish all
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Genomic context

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See chpf2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 5 NC_053404.1 (16812527..16817742, complement)

Chromosome 5 - NC_053404.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor, X-box binding 1 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D3b Neighboring gene uncharacterized si:ch73-173p19.1 Neighboring gene ATP-binding cassette, sub-family F (GCN20), member 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053404.1 Chromosome 5 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053404.1 Reference ASM1685928v1 Primary Assembly

    Range
    16812527..16817742 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040127652.1 → XP_039983586.1  chondroitin sulfate glucuronyltransferase

    Related
    ENSXGLP00000028145.1, ENSXGLT00000028725.1
    Conserved Domains (1) summary
    cl21608
    Location:176 → 271
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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