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LOC120790010 beta-1,4-galactosyltransferase 1-like [ Xiphias gladius (swordfish) ]

Gene ID: 120790010, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120790010
Gene description
beta-1,4-galactosyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
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Genomic context

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See LOC120790010 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 5 NC_053404.1 (9700957..9703630, complement)

Chromosome 5 - NC_053404.1Genomic Context describing neighboring genes Neighboring gene myotubularin related protein 6 Neighboring gene APC membrane recruitment protein 2 Neighboring gene zinc finger homeobox 4 Neighboring gene peroxisomal biogenesis factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053404.1 Chromosome 5 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytoskeletal protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053404.1 Reference ASM1685928v1 Primary Assembly

    Range
    9700957..9703630 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040127245.1 → XP_039983179.1  beta-1,4-galactosyltransferase 1-like

    Conserved Domains (1) summary
    cd00899
    Location:113 → 330
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein
Heading Accession and Version

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