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unm_hu7910 un-named hu7910 [ Xiphias gladius (swordfish) ]

Gene ID: 120789881, updated on 8-May-2024

Summary

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Gene symbol
unm_hu7910
Gene description
un-named hu7910
See related
EnsemblRapid:ENSXGLG00000000491
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
Orthologs
zebrafish all
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Genomic context

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See unm_hu7910 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
29
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 5 NC_053404.1 (21911468..21949638)

Chromosome 5 - NC_053404.1Genomic Context describing neighboring genes Neighboring gene sodium channel protein type 4 subunit alpha-like Neighboring gene signal sequence receptor, alpha Neighboring gene myelin-associated glycoprotein-like Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like Neighboring gene clavesin-1-like Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene RIO kinase 3 (yeast)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053404.1 Chromosome 5 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053404.1 Reference ASM1685928v1 Primary Assembly

    Range
    21911468..21949638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040127061.1 → XP_039982995.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

    Related
    ENSXGLP00000000757.1, ENSXGLT00000000948.1
    Conserved Domains (4) summary
    pfam05279
    Location:45 → 287
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:312 → 500
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:393 → 419
    TPR; TPR repeat [structural motif]
    cl40423
    Location:559 → 716
    cupin_RmlC-like; RmlC-like cupin superfamily

  2. XM_040127054.1 → XP_039982988.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

    Conserved Domains (5) summary
    MTH00095
    Location:8 → 56
    ND5; NADH dehydrogenase subunit 5; Provisional
    pfam05279
    Location:90 → 332
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:357 → 545
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:438 → 464
    TPR; TPR repeat [structural motif]
    cl40423
    Location:604 → 761
    cupin_RmlC-like; RmlC-like cupin superfamily

  3. XM_040127049.1 → XP_039982983.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Conserved Domains (4) summary
    pfam05279
    Location:112 → 354
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:379 → 567
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:460 → 486
    TPR; TPR repeat [structural motif]
    cl40423
    Location:626 → 783
    cupin_RmlC-like; RmlC-like cupin superfamily

  4. XM_040127053.1 → XP_039982987.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (4) summary
    pfam05279
    Location:112 → 324
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:363 → 551
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:444 → 470
    TPR; TPR repeat [structural motif]
    cl40423
    Location:610 → 767
    cupin_RmlC-like; RmlC-like cupin superfamily

  5. XM_040127051.1 → XP_039982985.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Conserved Domains (4) summary
    pfam05279
    Location:112 → 342
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:367 → 555
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:448 → 474
    TPR; TPR repeat [structural motif]
    cl40423
    Location:614 → 771
    cupin_RmlC-like; RmlC-like cupin superfamily

  6. XM_040127056.1 → XP_039982990.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    Conserved Domains (4) summary
    pfam05279
    Location:112 → 326
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:351 → 539
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:432 → 458
    TPR; TPR repeat [structural motif]
    cl40423
    Location:598 → 755
    cupin_RmlC-like; RmlC-like cupin superfamily

  7. XM_040127059.1 → XP_039982993.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

    Conserved Domains (4) summary
    pfam05279
    Location:112 → 216
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:326 → 514
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:407 → 433
    TPR; TPR repeat [structural motif]
    cl40423
    Location:573 → 730
    cupin_RmlC-like; RmlC-like cupin superfamily

  8. XM_040127057.1 → XP_039982991.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

    Conserved Domains (4) summary
    pfam05279
    Location:112 → 315
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:340 → 528
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:421 → 447
    TPR; TPR repeat [structural motif]
    cl40423
    Location:587 → 744
    cupin_RmlC-like; RmlC-like cupin superfamily

  9. XM_040127050.1 → XP_039982984.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Conserved Domains (4) summary
    pfam05279
    Location:112 → 342
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:367 → 555
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:448 → 474
    TPR; TPR repeat [structural motif]
    cl40423
    Location:614 → 771
    cupin_RmlC-like; RmlC-like cupin superfamily

  10. XM_040127058.1 → XP_039982992.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

    Conserved Domains (4) summary
    pfam05279
    Location:112 → 303
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:328 → 516
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:409 → 435
    TPR; TPR repeat [structural motif]
    cl40423
    Location:575 → 732
    cupin_RmlC-like; RmlC-like cupin superfamily

  11. XM_040127055.1 → XP_039982989.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

    Conserved Domains (4) summary
    pfam05279
    Location:112 → 331
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:356 → 544
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:437 → 463
    TPR; TPR repeat [structural motif]
    cl40423
    Location:603 → 760
    cupin_RmlC-like; RmlC-like cupin superfamily

  12. XM_040127052.1 → XP_039982986.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (4) summary
    pfam05279
    Location:112 → 339
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG0457
    Location:364 → 552
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:445 → 471
    TPR; TPR repeat [structural motif]
    cl40423
    Location:611 → 768
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein
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