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LOC120789858 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Xiphias gladius (swordfish) ]

Gene ID: 120789858, updated on 8-May-2024

Summary

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Gene symbol
LOC120789858
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
See related
EnsemblRapid:ENSXGLG00000018387
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
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Genomic context

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See LOC120789858 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 1 NC_053400.1 (15622289..15632811, complement)

Chromosome 1 - NC_053400.1Genomic Context describing neighboring genes Neighboring gene kinesin family binding protein Neighboring gene mitochondrial pyruvate carrier 1 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box helicase 21 Neighboring gene chitin synthase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053400.1 Chromosome 1 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053400.1 Reference ASM1685928v1 Primary Assembly

    Range
    15622289..15632811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040126938.1 → XP_039982872.1  LOW QUALITY PROTEIN: globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

    Related
    ENSXGLP00000053691.1, ENSXGLT00000055368.1
    Conserved Domains (1) summary
    cl11394
    Location:85 → 348
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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