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pleca plectin a [ Xiphias gladius (swordfish) ]

Gene ID: 120786785, updated on 8-May-2024

Summary

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Gene symbol
pleca
Gene description
plectin a
See related
EnsemblRapid:ENSXGLG00000002782
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 24
Exon count:
43
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 24 NC_053423.1 (20721375..20832586, complement)

Chromosome 24 - NC_053423.1Genomic Context describing neighboring genes Neighboring gene epiplakin 1 Neighboring gene doublesex- and mab-3-related transcription factor 1-like Neighboring gene uncharacterized LOC120786791 Neighboring gene eukaryotic translation initiation factor 3, subunit E, b Neighboring gene transmembrane protein 74

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053423.1 Chromosome 24 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053423.1 Reference ASM1685928v1 Primary Assembly

    Range
    20721375..20832586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040122434.1 → XP_039978368.1  plectin a isoform X2

    Related
    ENSXGLP00000014281.1, ENSXGLT00000014729.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1502 → 2236
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:685 → 779
    SPEC; Spectrin repeats
    smart00250
    Location:4471 → 4508
    PLEC; Plectin repeat
    COG5069
    Location:194 → 416
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:780 → 970
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam02463
    Location:1078 → 1877
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_040122433.1 → XP_039978367.1  plectin a isoform X1

    Conserved Domains (6) summary
    PTZ00121
    Location:1509 → 2243
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:685 → 779
    SPEC; Spectrin repeats
    smart00250
    Location:4478 → 4515
    PLEC; Plectin repeat
    COG0419
    Location:1198 → 1742
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:194 → 416
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:780 → 970
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  3. XM_040122438.1 → XP_039978372.1  plectin a isoform X6

    Related
    ENSXGLP00000014234.1, ENSXGLT00000014682.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1345 → 2079
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:521 → 615
    SPEC; Spectrin repeats
    smart00250
    Location:4314 → 4351
    PLEC; Plectin repeat
    COG0419
    Location:1034 → 1578
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:35 → 252
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:616 → 806
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  4. XM_040122443.1 → XP_039978377.1  plectin a isoform X11

    Conserved Domains (6) summary
    PTZ00121
    Location:1296 → 2030
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:472 → 566
    SPEC; Spectrin repeats
    smart00250
    Location:4265 → 4302
    PLEC; Plectin repeat
    COG0419
    Location:985 → 1529
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:2 → 203
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:567 → 757
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  5. XM_040122441.1 → XP_039978375.1  plectin a isoform X9

    Related
    ENSXGLP00000014104.1, ENSXGLT00000014551.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1328 → 2062
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:504 → 598
    SPEC; Spectrin repeats
    smart00250
    Location:4297 → 4334
    PLEC; Plectin repeat
    COG0419
    Location:1017 → 1561
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:13 → 235
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:599 → 789
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  6. XM_040122439.1 → XP_039978373.1  plectin a isoform X7

    Related
    ENSXGLP00000013857.1, ENSXGLT00000014304.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1342 → 2076
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:525 → 619
    SPEC; Spectrin repeats
    smart00250
    Location:4311 → 4348
    PLEC; Plectin repeat
    COG5069
    Location:39 → 256
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:620 → 810
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam02463
    Location:918 → 1717
    SMC_N; RecF/RecN/SMC N terminal domain

  7. XM_040122436.1 → XP_039978370.1  plectin a isoform X4

    Conserved Domains (6) summary
    PTZ00121
    Location:1349 → 2083
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:525 → 619
    SPEC; Spectrin repeats
    smart00250
    Location:4318 → 4355
    PLEC; Plectin repeat
    COG0419
    Location:1038 → 1582
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:39 → 256
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:620 → 810
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  8. XM_040122442.1 → XP_039978376.1  plectin a isoform X10

    Related
    ENSXGLP00000013840.1, ENSXGLT00000014287.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1325 → 2059
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:508 → 602
    SPEC; Spectrin repeats
    smart00250
    Location:4294 → 4331
    PLEC; Plectin repeat
    COG5069
    Location:17 → 239
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:603 → 793
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam02463
    Location:901 → 1700
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_040122440.1 → XP_039978374.1  plectin a isoform X8

    Conserved Domains (6) summary
    PTZ00121
    Location:1332 → 2066
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:508 → 602
    SPEC; Spectrin repeats
    smart00250
    Location:4301 → 4338
    PLEC; Plectin repeat
    COG0419
    Location:1021 → 1565
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:17 → 239
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:603 → 793
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  10. XM_040122435.1 → XP_039978369.1  plectin a isoform X3

    Conserved Domains (6) summary
    PTZ00121
    Location:1353 → 2087
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:529 → 623
    SPEC; Spectrin repeats
    smart00250
    Location:4322 → 4359
    PLEC; Plectin repeat
    COG0419
    Location:1042 → 1586
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:43 → 260
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:624 → 814
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

  11. XM_040122437.1 → XP_039978371.1  plectin a isoform X5

    Related
    ENSXGLP00000013829.1, ENSXGLT00000014275.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1346 → 2080
    PTZ00121; MAEBL; Provisional
    smart00150
    Location:529 → 623
    SPEC; Spectrin repeats
    smart00250
    Location:4315 → 4352
    PLEC; Plectin repeat
    COG5069
    Location:43 → 260
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:624 → 814
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam02463
    Location:922 → 1721
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
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