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plecb plectin b [ Xiphias gladius (swordfish) ]

Gene ID: 120783895, updated on 8-May-2024

Summary

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Gene symbol
plecb
Gene description
plectin b
See related
EnsemblRapid:ENSXGLG00000002837
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
Orthologs
zebrafish all
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Genomic context

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See plecb in Genome Data Viewer
Location:
chromosome: 22
Exon count:
38
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 22 NC_053421.1 (7928942..8047283)

Chromosome 22 - NC_053421.1Genomic Context describing neighboring genes Neighboring gene R-spondin 2 Neighboring gene uncharacterized LOC120784573 Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053421.1 Chromosome 22 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ankyrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemidesmosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in hemidesmosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053421.1 Reference ASM1685928v1 Primary Assembly

    Range
    7928942..8047283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040117263.1 → XP_039973197.1  plectin isoform X3

    Related
    ENSXGLP00000008724.1, ENSXGLT00000009035.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1334 → 2069
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4296 → 4330
    PLEC; Plectin repeat
    COG5069
    Location:35 → 256
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:614 → 803
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:307 → 630
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:805 → 849
    SH3; Src Homology 3 domain superfamily

  2. XM_040117265.1 → XP_039973199.1  plectin isoform X5

    Conserved Domains (6) summary
    PTZ00121
    Location:1319 → 2054
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4281 → 4315
    PLEC; Plectin repeat
    COG5069
    Location:20 → 241
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:599 → 788
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:292 → 615
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:790 → 834
    SH3; Src Homology 3 domain superfamily

  3. XM_040117268.1 → XP_039973202.1  plectin isoform X7

    Related
    ENSXGLP00000008581.1, ENSXGLT00000008892.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1312 → 2047
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4274 → 4308
    PLEC; Plectin repeat
    COG5069
    Location:13 → 234
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:592 → 781
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:285 → 608
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:783 → 827
    SH3; Src Homology 3 domain superfamily

  4. XM_040117261.1 → XP_039973195.1  plectin isoform X1

    Related
    ENSXGLP00000008566.1, ENSXGLT00000008877.1
    Conserved Domains (8) summary
    PTZ00121
    Location:2438 → 3173
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5400 → 5434
    PLEC; Plectin repeat
    COG5069
    Location:1134 → 1360
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1718 → 1907
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1411 → 1734
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam05109
    Location:259 → 531
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02102
    Location:5 → 133
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1909 → 1953
    SH3; Src Homology 3 domain superfamily

  5. XM_040117262.1 → XP_039973196.1  plectin isoform X2

    Conserved Domains (8) summary
    PTZ00121
    Location:2434 → 3169
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:5396 → 5430
    PLEC; Plectin repeat
    COG5069
    Location:1134 → 1356
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1714 → 1903
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:1407 → 1730
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam05109
    Location:259 → 531
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02102
    Location:5 → 133
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1905 → 1949
    SH3; Src Homology 3 domain superfamily

  6. XM_040117264.1 → XP_039973198.1  plectin isoform X4

    Conserved Domains (8) summary
    smart00250
    Location:4282 → 4316
    PLEC; Plectin repeat
    COG0419
    Location:2076 → 2589
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1134 → 1470
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1718 → 1907
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR03835
    Location:381 → 745
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    pfam05109
    Location:259 → 531
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02102
    Location:5 → 133
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1909 → 1953
    SH3; Src Homology 3 domain superfamily

  7. XM_040117266.1 → XP_039973200.1  plectin isoform X6

    Conserved Domains (8) summary
    smart00250
    Location:4278 → 4312
    PLEC; Plectin repeat
    COG0419
    Location:2072 → 2585
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    COG5069
    Location:1134 → 1466
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:1714 → 1903
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR03835
    Location:381 → 745
    termin_org_DnaJ; terminal organelle assembly protein TopJ
    pfam05109
    Location:259 → 531
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl02102
    Location:5 → 133
    S10_plectin; Plectin/S10 domain
    cl17036
    Location:1905 → 1949
    SH3; Src Homology 3 domain superfamily

  8. XM_040117269.1 → XP_039973203.1  plectin isoform X8

    Related
    ENSXGLP00000008262.1, ENSXGLT00000008572.1
    Conserved Domains (6) summary
    PTZ00121
    Location:1309 → 2044
    PTZ00121; MAEBL; Provisional
    smart00250
    Location:4271 → 4305
    PLEC; Plectin repeat
    COG5069
    Location:10 → 231
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:589 → 778
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    TIGR02168
    Location:282 → 605
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:780 → 824
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
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