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hcfc1a host cell factor C1a [ Xiphias gladius (swordfish) ]

Gene ID: 120783327, updated on 8-May-2024

Summary

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Gene symbol
hcfc1a
Gene description
host cell factor C1a
See related
EnsemblRapid:ENSXGLG00000013144
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphias gladius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Istiophoriformes; Xiphiidae; Xiphias
Orthologs
zebrafish all
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Genomic context

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See hcfc1a in Genome Data Viewer
Location:
chromosome: 21
Exon count:
28
Annotation release Status Assembly Chr Location
100 current ASM1685928v1 (GCF_016859285.1) 21 NC_053420.1 (25754192..25767975, complement)

Chromosome 21 - NC_053420.1Genomic Context describing neighboring genes Neighboring gene GATA binding protein 1a Neighboring gene uncharacterized LOC120783329 Neighboring gene opsin 1 (cone pigments), short-wave-sensitive 2 Neighboring gene blue-sensitive opsin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053420.1 Chromosome 21 Reference ASM1685928v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphias gladius Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1685928v1 Primary Assembly

Genomic

  1. NC_053420.1 Reference ASM1685928v1 Primary Assembly

    Range
    25754192..25767975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040116244.1 → XP_039972178.1  host cell factor 1a isoform X2

    Conserved Domains (3) summary
    PLN02153
    Location:13 → 334
    PLN02153; epithiospecifier protein
    cd00063
    Location:1528 → 1557
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]

  2. XM_040116243.1 → XP_039972177.1  host cell factor 1a isoform X1

    Related
    ENSXGLP00000039084.1, ENSXGLT00000039920.1
    Conserved Domains (4) summary
    PLN02153
    Location:13 → 334
    PLN02153; epithiospecifier protein
    cd00063
    Location:1563 → 1592
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:201 → 254
    Kelch; KELCH repeat [structural motif]
    pfam05109
    Location:650 → 957
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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