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POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [ Hirundo rustica (Barn swallow) ]

Gene ID: 120756738, updated on 3-Aug-2024

Summary

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Gene symbol
POMGNT1
Gene description
protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
See related
EnsemblRapid:ENSHRRG00010013672
Gene type
protein coding
RefSeq status
MODEL
Organism
Hirundo rustica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Hirundinidae; Hirundo
Orthologs
human mouse all
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Genomic context

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See POMGNT1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_07 current bHirRus1.pri.v3 (GCF_015227805.2) 9 NC_053458.1 (8956836..8970719)

Chromosome 9 - NC_053458.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120756508 Neighboring gene uncharacterized LOC131378603 Neighboring gene leucine rich adaptor protein 1 Neighboring gene tetraspanin 1 Neighboring gene phosphoinositide-3-kinase regulatory subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053458.1 Chromosome 9 Reference bHirRus1.pri.v3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_015227805.2-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bHirRus1.pri.v3

Genomic

  1. NC_053458.1 Reference bHirRus1.pri.v3

    Range
    8956836..8970719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040073346.2 → XP_039929280.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A7L4EPL4
    Related
    ENSHRRP00010018576.1, ENSHRRT00010019686.2
    Conserved Domains (2) summary
    cd02514
    Location:294 → 621
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cd13937
    Location:92 → 239
    PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases
Nucleotide Protein
Heading Accession and Version

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