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SHOC2 SHOC2 leucine rich repeat scaffold protein [ Hirundo rustica (Barn swallow) ]

Gene ID: 120755848, updated on 10-Oct-2024

Summary

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Gene symbol
SHOC2
Gene description
SHOC2 leucine rich repeat scaffold protein
See related
EnsemblRapid:ENSHRRG00010005833
Gene type
protein coding
RefSeq status
MODEL
Organism
Hirundo rustica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Hirundinidae; Hirundo
Orthologs
human mouse all
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Genomic context

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See SHOC2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_07 current bHirRus1.pri.v3 (GCF_015227805.2) 8 NC_053457.1 (26439999..26499904)

Chromosome 8 - NC_053457.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 20 Neighboring gene programmed cell death 4 Neighboring gene BBSome interacting protein 1 Neighboring gene uncharacterized LOC120756088 Neighboring gene adrenoceptor alpha 2A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053457.1 Chromosome 8 Reference bHirRus1.pri.v3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat protein SHOC-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_015227805.2-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bHirRus1.pri.v3

Genomic

  1. NC_053457.1 Reference bHirRus1.pri.v3

    Range
    26439999..26499904
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040071426.1 → XP_039927360.1  leucine-rich repeat protein SHOC-2

    UniProtKB/TrEMBL
    A0A3M0KDS1
    Conserved Domains (2) summary
    PLN00113
    Location:101 → 543
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:264 → 285
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_040071428.2 → XP_039927362.1  leucine-rich repeat protein SHOC-2

    UniProtKB/TrEMBL
    A0A3M0KDS1
    Conserved Domains (2) summary
    PLN00113
    Location:101 → 543
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:264 → 285
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_040071427.2 → XP_039927361.1  leucine-rich repeat protein SHOC-2

    UniProtKB/TrEMBL
    A0A3M0KDS1
    Conserved Domains (2) summary
    PLN00113
    Location:101 → 543
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:264 → 285
    LRR_RI; leucine-rich repeat [structural motif]

  4. XM_058421572.1 → XP_058277555.1  leucine-rich repeat protein SHOC-2

    Related
    ENSHRRP00010007999.1, ENSHRRT00010008467.2

  5. XM_058421573.1 → XP_058277556.1  leucine-rich repeat protein SHOC-2

Nucleotide Protein
Heading Accession and Version

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