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GALNT13 polypeptide N-acetylgalactosaminyltransferase 13 [ Hirundo rustica (Barn swallow) ]

Gene ID: 120755403, updated on 3-Aug-2024

Summary

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Gene symbol
GALNT13
Gene description
polypeptide N-acetylgalactosaminyltransferase 13
See related
EnsemblRapid:ENSHRRG00010007568
Gene type
protein coding
RefSeq status
MODEL
Organism
Hirundo rustica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Hirundinidae; Hirundo
Orthologs
human mouse all
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Genomic context

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See GALNT13 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_07 current bHirRus1.pri.v3 (GCF_015227805.2) 7 NC_053456.1 (1093948..1137060, complement)

Chromosome 7 - NC_053456.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 4 group A member 2 Neighboring gene potassium inwardly rectifying channel subfamily J member 3 Neighboring gene pre-mRNA processing factor 40 homolog A Neighboring gene formin like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053456.1 Chromosome 7 Reference bHirRus1.pri.v3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_015227805.2-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bHirRus1.pri.v3

Genomic

  1. NC_053456.1 Reference bHirRus1.pri.v3

    Range
    1093948..1137060 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040070251.2 → XP_039926185.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A3M0LIL3
    Related
    ENSHRRP00010010287.2, ENSHRRT00010010887.2
    Conserved Domains (2) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:431 → 549
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

  2. XM_040070252.2 → XP_039926186.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X2

    UniProtKB/TrEMBL
    A0A3M0LIL3
    Conserved Domains (2) summary
    cd02510
    Location:59 → 359
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:372 → 490
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

RNA

  1. XR_005701758.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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