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LOC120753504 toll-like receptor 2 type-1 [ Hirundo rustica (Barn swallow) ]

Gene ID: 120753504, updated on 3-Aug-2024

Summary

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Gene symbol
LOC120753504
Gene description
toll-like receptor 2 type-1
See related
EnsemblRapid:ENSHRRG00010002070
Gene type
protein coding
RefSeq status
MODEL
Organism
Hirundo rustica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Hirundinidae; Hirundo
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Genomic context

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See LOC120753504 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_07 current bHirRus1.pri.v3 (GCF_015227805.2) 5 NC_053454.1 (41389784..41397342)

Chromosome 5 - NC_053454.1Genomic Context describing neighboring genes Neighboring gene meiotic nuclear divisions 1 Neighboring gene transmembrane 131 like Neighboring gene toll-like receptor 2 type-2 Neighboring gene uncharacterized LOC120753519 Neighboring gene secreted frizzled related protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053454.1 Chromosome 5 Reference bHirRus1.pri.v3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2 type-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_015227805.2-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bHirRus1.pri.v3

Genomic

  1. NC_053454.1 Reference bHirRus1.pri.v3

    Range
    41389784..41397342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040065788.2 → XP_039921722.1  toll-like receptor 2 type-1

    UniProtKB/TrEMBL
    A0A3M0KMN8
    Conserved Domains (4) summary
    smart00255
    Location:662 → 806
    TIR; Toll - interleukin 1 - resistance
    PLN00113
    Location:78 → 557
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:58 → 76
    LRR_RI; leucine-rich repeat [structural motif]
    cl15307
    Location:555 → 608
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

  2. XM_040065789.2 → XP_039921723.1  toll-like receptor 2 type-1

    UniProtKB/TrEMBL
    A0A3M0KMN8
    Related
    ENSHRRP00010002832.1, ENSHRRT00010002994.2
    Conserved Domains (4) summary
    smart00255
    Location:662 → 806
    TIR; Toll - interleukin 1 - resistance
    PLN00113
    Location:78 → 557
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:58 → 76
    LRR_RI; leucine-rich repeat [structural motif]
    cl15307
    Location:555 → 608
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
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