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SGCG sarcoglycan gamma [ Hirundo rustica (Barn swallow) ]

Gene ID: 120748908, updated on 3-Aug-2024

Summary

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Gene symbol
SGCG
Gene description
sarcoglycan gamma
See related
EnsemblRapid:ENSHRRG00010001626
Gene type
protein coding
RefSeq status
MODEL
Organism
Hirundo rustica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Hirundinidae; Hirundo
Orthologs
human mouse all
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Genomic context

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See SGCG in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_07 current bHirRus1.pri.v3 (GCF_015227805.2) 2 NC_053451.1 (46123565..46231031)

Chromosome 2 - NC_053451.1Genomic Context describing neighboring genes Neighboring gene mitochondrial calcium uptake 2 Neighboring gene fibroblast growth factor 9 Neighboring gene sacsin molecular chaperone Neighboring gene TNF receptor superfamily member 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053451.1 Chromosome 2 Reference bHirRus1.pri.v3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_015227805.2-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bHirRus1.pri.v3

Genomic

  1. NC_053451.1 Reference bHirRus1.pri.v3

    Range
    46123565..46231031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040055863.2 → XP_039911797.1  gamma-sarcoglycan

    UniProtKB/TrEMBL
    A0A3M0K7I2, A0A7L4ETA0
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_040055867.2 → XP_039911801.1  gamma-sarcoglycan

    UniProtKB/TrEMBL
    A0A3M0K7I2, A0A7L4ETA0
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_040055865.2 → XP_039911799.1  gamma-sarcoglycan

    UniProtKB/TrEMBL
    A0A3M0K7I2, A0A7L4ETA0
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_040055862.2 → XP_039911796.1  gamma-sarcoglycan

    UniProtKB/TrEMBL
    A0A3M0K7I2, A0A7L4ETA0
    Related
    ENSHRRP00010002218.1, ENSHRRT00010002337.2
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_040055868.2 → XP_039911802.1  gamma-sarcoglycan

    UniProtKB/TrEMBL
    A0A3M0K7I2, A0A7L4ETA0
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_040055866.2 → XP_039911800.1  gamma-sarcoglycan

    UniProtKB/TrEMBL
    A0A3M0K7I2, A0A7L4ETA0
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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