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LOC120712335 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [ Panicum virgatum (switchgrass) ]

Gene ID: 120712335, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120712335
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
Locus tag
PVAP13_6KG247400
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120712335 in Genome Data Viewer
Location:
chromosome: 6K
Exon count:
5
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 6K NC_053141.1 (35011905..35018824, complement)

Chromosome 6K - NC_053141.1Genomic Context describing neighboring genes Neighboring gene transcription factor IBH1-like Neighboring gene uncharacterized LOC120712334 Neighboring gene uncharacterized LOC120713426 Neighboring gene thioredoxin-like protein YLS8 Neighboring gene probable carboxylesterase 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053141.1 Chromosome 6K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053141.1 Reference P.virgatum_v5 Primary Assembly

    Range
    35011905..35018824 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039998095.1 → XP_039854029.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A8T0QZA0, A0A8T0RG93
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 844
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. XM_039998096.1 → XP_039854030.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9

    UniProtKB/TrEMBL
    A0A8T0QZA0, A0A8T0RG93
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 844
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein Strain
Heading Accession and Version

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