U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC120712233 hydroxyproline O-galactosyltransferase HPGT1-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120712233, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC120712233
Gene description
hydroxyproline O-galactosyltransferase HPGT1-like
Locus tag
PVAP13_6KG232500
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC120712233 in Genome Data Viewer
Location:
chromosome: 6K
Exon count:
12
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 6K NC_053141.1 (32437627..32443089)

Chromosome 6K - NC_053141.1Genomic Context describing neighboring genes Neighboring gene transcription factor WRKY19-like Neighboring gene cytochrome B5-like protein Neighboring gene mitochondrial carrier protein MTM1-like Neighboring gene norbelladine synthase-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_053141.1 Chromosome 6K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hydroxyproline O-galactosyltransferase HPGT1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053141.1 Reference P.virgatum_v5 Primary Assembly

    Range
    32437627..32443089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039997983.1 → XP_039853917.1  hydroxyproline O-galactosyltransferase HPGT1-like

    UniProtKB/TrEMBL
    A0A8T0QZU4, A0A8T0RDS0
    Conserved Domains (2) summary
    PLN03193
    Location:84 → 345
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:21 → 97
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases