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LOC120712168 probable galacturonosyltransferase 4 [ Panicum virgatum (switchgrass) ]

Gene ID: 120712168, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120712168
Gene description
probable galacturonosyltransferase 4
Locus tag
PVAP13_6KG245718
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120712168 in Genome Data Viewer
Location:
chromosome: 6K
Exon count:
10
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 6K NC_053141.1 (28817600..28823231, complement)

Chromosome 6K - NC_053141.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120713370 Neighboring gene uncharacterized LOC120712167 Neighboring gene uncharacterized LOC120712169 Neighboring gene uncharacterized LOC120712171

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053141.1 Chromosome 6K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053141.1 Reference P.virgatum_v5 Primary Assembly

    Range
    28817600..28823231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039997882.1 → XP_039853816.1  probable galacturonosyltransferase 4 isoform X2

    Conserved Domains (1) summary
    PLN02829
    Location:1 → 487
    PLN02829; Probable galacturonosyltransferase

  2. XM_039997881.1 → XP_039853815.1  probable galacturonosyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A8T0QXS1, A0A8T0RD08
    Conserved Domains (1) summary
    PLN02829
    Location:7 → 642
    PLN02829; Probable galacturonosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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