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LOC120712052 probable galacturonosyltransferase 4 [ Panicum virgatum (switchgrass) ]

Gene ID: 120712052, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120712052
Gene description
probable galacturonosyltransferase 4
Locus tag
PVAP13_6KG151760
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
Also known as
GAUT4
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Genomic context

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See LOC120712052 in Genome Data Viewer
Location:
chromosome: 6K
Exon count:
9
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 6K NC_053141.1 (23000567..23005242)

Chromosome 6K - NC_053141.1Genomic Context describing neighboring genes Neighboring gene GMP synthase [glutamine-hydrolyzing]-like Neighboring gene subtilisin-like protease SBT5.3 Neighboring gene exopolygalacturonase-like Neighboring gene histone-lysine N-methyltransferase ATXR6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053141.1 Chromosome 6K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 4
Names
galacturonosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053141.1 Reference P.virgatum_v5 Primary Assembly

    Range
    23000567..23005242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039997755.1 → XP_039853689.1  probable galacturonosyltransferase 4 isoform X2

    Conserved Domains (1) summary
    PLN02829
    Location:1 → 487
    PLN02829; Probable galacturonosyltransferase

  2. XM_039997754.1 → XP_039853688.1  probable galacturonosyltransferase 4 isoform X1

    UniProtKB/TrEMBL
    A0A1S6Q352, A0A8T0QXS1
    Conserved Domains (1) summary
    PLN02829
    Location:1 → 643
    PLN02829; Probable galacturonosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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