U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC120711646 soluble starch synthase 3a, chloroplastic/amyloplastic-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120711646, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Gene symbol
LOC120711646
Gene description
soluble starch synthase 3a, chloroplastic/amyloplastic-like
Locus tag
PVAP13_6KG087300
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC120711646 in Genome Data Viewer
Location:
chromosome: 6K
Exon count:
16
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 6K NC_053141.1 (9774757..9818812)

Chromosome 6K - NC_053141.1Genomic Context describing neighboring genes Neighboring gene putative aconitate hydratase, cytoplasmic Neighboring gene starch synthase 3, chloroplastic/amyloplastic-like Neighboring gene polyphenol oxidase I, chloroplastic-like Neighboring gene polyphenol oxidase I, chloroplastic-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_053141.1 Chromosome 6K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
soluble starch synthase 3a, chloroplastic/amyloplastic-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053141.1 Reference P.virgatum_v5 Primary Assembly

    Range
    9774757..9818812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039997248.1 → XP_039853182.1  soluble starch synthase 3a, chloroplastic/amyloplastic-like

    UniProtKB/TrEMBL
    A0A8T0QVG2
    Conserved Domains (1) summary
    PLN02316
    Location:544 → 1556
    PLN02316; synthase/transferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases