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LOC120709444 probable glucuronosyltransferase Os01g0157700 [ Panicum virgatum (switchgrass) ]

Gene ID: 120709444, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120709444
Gene description
probable glucuronosyltransferase Os01g0157700
Locus tag
PVAP13_5KG083087
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120709444 in Genome Data Viewer
Location:
chromosome: 5K
Exon count:
4
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 5K NC_053140.1 (6200658..6217680, complement)

Chromosome 5K - NC_053140.1Genomic Context describing neighboring genes Neighboring gene elongation factor 1-alpha-like Neighboring gene elongation factor 1-alpha-like Neighboring gene uncharacterized LOC120705929 Neighboring gene uncharacterized LOC120705930

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053140.1 Chromosome 5K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glucuronosyltransferase Os01g0157700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053140.1 Reference P.virgatum_v5 Primary Assembly

    Range
    6200658..6217680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039995071.1 → XP_039851005.1  probable glucuronosyltransferase Os01g0157700

    Conserved Domains (1) summary
    cl11394
    Location:104 → 171
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

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