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LOC120709133 probable glucuronosyltransferase Os01g0926400 [ Panicum virgatum (switchgrass) ]

Gene ID: 120709133, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120709133
Gene description
probable glucuronosyltransferase Os01g0926400
Locus tag
PVAP13_5KG745400
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120709133 in Genome Data Viewer
Location:
chromosome: 5K
Exon count:
4
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 5K NC_053140.1 (59852649..59857741, complement)

Chromosome 5K - NC_053140.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase At3g02290-like Neighboring gene transaldolase-like Neighboring gene probable glucuronosyltransferase Os01g0926600 Neighboring gene transfer RNA phenylalanine (anticodon GAA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053140.1 Chromosome 5K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glucuronosyltransferase Os01g0926400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053140.1 Reference P.virgatum_v5 Primary Assembly

    Range
    59852649..59857741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039994666.1 → XP_039850600.1  probable glucuronosyltransferase Os01g0926400

    UniProtKB/TrEMBL
    A0A8T0SWM9
    Conserved Domains (1) summary
    pfam03016
    Location:53 → 348
    Exostosin; Exostosin family
Nucleotide Protein Strain
Heading Accession and Version

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