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LOC120708865 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120708865, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120708865
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like
Locus tag
PVAP13_5KG673700
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120708865 in Genome Data Viewer
Location:
chromosome: 5K
Exon count:
6
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 5K NC_053140.1 (56807876..56813745)

Chromosome 5K - NC_053140.1Genomic Context describing neighboring genes Neighboring gene ribosomal lysine N-methyltransferase 3-like Neighboring gene uncharacterized LOC120710798 Neighboring gene uncharacterized LOC120708866 Neighboring gene probable pectinesterase/pectinesterase inhibitor 51

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053140.1 Chromosome 5K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like; putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053140.1 Reference P.virgatum_v5 Primary Assembly

    Range
    56807876..56813745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039994286.1 → XP_039850220.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A8T0SUN9, A0A8T0T218
    Conserved Domains (1) summary
    cd02537
    Location:303 → 548
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  2. XM_039994285.1 → XP_039850219.1  putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A8T0SU68, A0A8T0T218
    Conserved Domains (1) summary
    cd02537
    Location:305 → 550
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein Strain
Heading Accession and Version

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