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LOC120707212 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120707212, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120707212
Gene description
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like
Locus tag
PVAP13_1KG367100
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120707212 in Genome Data Viewer
Location:
chromosome: 1K
Exon count:
2
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 1K NC_053136.1 (39641666..39645246, complement)

Chromosome 1K - NC_053136.1Genomic Context describing neighboring genes Neighboring gene protein DWARF AND LOW-TILLERING-like Neighboring gene NAC domain-containing protein 73-like Neighboring gene uncharacterized LOC120707220 Neighboring gene uncharacterized LOC120655213

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053136.1 Chromosome 1K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053136.1 Reference P.virgatum_v5 Primary Assembly

    Range
    39641666..39645246 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039992058.1 → XP_039847992.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like

    UniProtKB/TrEMBL
    A0A8T0X3Y5, A0A8T0XHQ7
    Conserved Domains (1) summary
    pfam04724
    Location:57 → 385
    Glyco_transf_17; Glycosyltransferase family 17
Nucleotide Protein Strain
Heading Accession and Version

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