U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC120705932 probable glucuronosyltransferase Os01g0157700 [ Panicum virgatum (switchgrass) ]

Gene ID: 120705932, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC120705932
Gene description
probable glucuronosyltransferase Os01g0157700
Locus tag
PVAP13_5KG087022
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC120705932 in Genome Data Viewer
Location:
chromosome: 5K
Exon count:
3
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 5K NC_053140.1 (6321532..6323086, complement)

Chromosome 5K - NC_053140.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120705935 Neighboring gene elongation factor 1-alpha-like Neighboring gene uncharacterized LOC120709448 Neighboring gene uncharacterized LOC120705936

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_053140.1 Chromosome 5K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable glucuronosyltransferase Os01g0157700

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053140.1 Reference P.virgatum_v5 Primary Assembly

    Range
    6321532..6323086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039990492.1 → XP_039846426.1  probable glucuronosyltransferase Os01g0157700

    UniProtKB/TrEMBL
    A0A8T0SF51
    Conserved Domains (1) summary
    cl11394
    Location:1 → 329
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases