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LOC120703389 probable starch synthase 4, chloroplastic/amyloplastic [ Panicum virgatum (switchgrass) ]

Gene ID: 120703389, updated on 18-Sep-2024

Summary

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Gene symbol
LOC120703389
Gene description
probable starch synthase 4, chloroplastic/amyloplastic
Locus tag
PVAP13_4KG129900
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120703389 in Genome Data Viewer
Location:
chromosome: 4K
Exon count:
16
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 4K NC_053139.1 (18797178..18805413, complement)

Chromosome 4K - NC_053139.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120703388 Neighboring gene UDP-glycosyltransferase 89B2-like Neighboring gene protein ANTHESIS POMOTING FACTOR 1-like Neighboring gene DNA topoisomerase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053139.1 Chromosome 4K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable starch synthase 4, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053139.1 Reference P.virgatum_v5 Primary Assembly

    Range
    18797178..18805413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039987442.1 → XP_039843376.1  probable starch synthase 4, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A8T0THL7, A0A8T0U194
    Conserved Domains (1) summary
    PLN02939
    Location:18 → 899
    PLN02939; transferase, transferring glycosyl groups
Nucleotide Protein Strain
Heading Accession and Version

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