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LOC120687808 mitochondrial carnitine/acylcarnitine carrier-like protein [ Panicum virgatum (switchgrass) ]

Gene ID: 120687808, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120687808
Gene description
mitochondrial carnitine/acylcarnitine carrier-like protein
Locus tag
PVAP13_9NG454100
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120687808 in Genome Data Viewer
Location:
chromosome: 9N
Exon count:
4
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 9N NC_053153.1 (50702406..50706321)

Chromosome 9N - NC_053153.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal export protein NMD3-like Neighboring gene uncharacterized LOC120692853 Neighboring gene mitochondrial carnitine/acylcarnitine carrier-like protein Neighboring gene transfer RNA methionine (anticodon CAU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053153.1 Chromosome 9N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ornithine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial carnitine/acylcarnitine carrier-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053153.1 Reference P.virgatum_v5 Primary Assembly

    Range
    50702406..50706321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039969829.1 → XP_039825763.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    UniProtKB/TrEMBL
    A0A8T0MVY4
    Conserved Domains (1) summary
    pfam00153
    Location:205 → 296
    Mito_carr; Mitochondrial carrier protein

  2. XM_039969831.1 → XP_039825765.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    UniProtKB/TrEMBL
    A0A8T0MVY4
    Conserved Domains (1) summary
    pfam00153
    Location:205 → 296
    Mito_carr; Mitochondrial carrier protein

  3. XM_039969830.1 → XP_039825764.1  mitochondrial carnitine/acylcarnitine carrier-like protein

    UniProtKB/TrEMBL
    A0A8T0MVY4
    Conserved Domains (1) summary
    pfam00153
    Location:205 → 296
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein Strain
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