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LOC120685613 beta-glucosidase-like SFR2, chloroplastic [ Panicum virgatum (switchgrass) ]

Gene ID: 120685613, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120685613
Gene description
beta-glucosidase-like SFR2, chloroplastic
Locus tag
PVAP13_8NG311400
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120685613 in Genome Data Viewer
Location:
chromosome: 8N
Exon count:
12
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 8N NC_053152.1 (49656734..49667155, complement)

Chromosome 8N - NC_053152.1Genomic Context describing neighboring genes Neighboring gene splicing factor U2af large subunit B-like Neighboring gene uncharacterized LOC120685611 Neighboring gene uncharacterized LOC120685614 Neighboring gene probable pectinesterase 53 Neighboring gene transcription factor JAMYB-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053152.1 Chromosome 8N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-glucosidase-like SFR2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053152.1 Reference P.virgatum_v5 Primary Assembly

    Range
    49656734..49667155 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039967640.1 → XP_039823574.1  beta-glucosidase-like SFR2, chloroplastic

    UniProtKB/TrEMBL
    A0A8T0PBW0, A0A8T0PFA5
    Conserved Domains (1) summary
    cl40694
    Location:200 → 556
    BglB; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]

  2. XM_039967641.1 → XP_039823575.1  beta-glucosidase-like SFR2, chloroplastic

    UniProtKB/TrEMBL
    A0A8T0PBW0, A0A8T0PFA5
    Conserved Domains (1) summary
    cl40694
    Location:200 → 556
    BglB; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]

  3. XM_039967642.1 → XP_039823576.1  beta-glucosidase-like SFR2, chloroplastic

    UniProtKB/TrEMBL
    A0A8T0PBW0, A0A8T0PFA5
    Conserved Domains (1) summary
    cl40694
    Location:200 → 556
    BglB; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]

RNA

  1. XR_005679660.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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