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LOC120682570 UDP-N-acetylglucosamine transferase subunit ALG13 homolog [ Panicum virgatum (switchgrass) ]

Gene ID: 120682570, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120682570
Gene description
UDP-N-acetylglucosamine transferase subunit ALG13 homolog
Locus tag
PVAP13_7NG037800
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120682570 in Genome Data Viewer
Location:
chromosome: 7N
Exon count:
4
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 7N NC_053151.1 (21488829..21492344, complement)

Chromosome 7N - NC_053151.1Genomic Context describing neighboring genes Neighboring gene oligoribonuclease-like Neighboring gene twist-related protein 1-like Neighboring gene phototropin-2-like Neighboring gene uncharacterized LOC120684069

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053151.1 Chromosome 7N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of UDP-N-acetylglucosamine transferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine transferase subunit ALG13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053151.1 Reference P.virgatum_v5 Primary Assembly

    Range
    21488829..21492344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039964530.1 → XP_039820464.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog

    UniProtKB/TrEMBL
    A0A8T0PUT8, A0A8T0QL74
    Conserved Domains (1) summary
    pfam04101
    Location:8 → 157
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain

  2. XM_039964529.1 → XP_039820463.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog

    UniProtKB/TrEMBL
    A0A8T0PUT8, A0A8T0QL74
    Conserved Domains (1) summary
    pfam04101
    Location:8 → 157
    Glyco_tran_28_C; Glycosyltransferase family 28 C-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

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