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LOC120678928 probable glucomannan 4-beta-mannosyltransferase 11 [ Panicum virgatum (switchgrass) ]

Gene ID: 120678928, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120678928
Gene description
probable glucomannan 4-beta-mannosyltransferase 11
Locus tag
PVAP13_6NG209509
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120678928 in Genome Data Viewer
Location:
chromosome: 6N
Exon count:
10
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 6N NC_053150.1 (39897839..39905971, complement)

Chromosome 6N - NC_053150.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease 3 Neighboring gene myb-related protein 1-like Neighboring gene uncharacterized LOC120679159 Neighboring gene uncharacterized LOC120678930 Neighboring gene uncharacterized LOC120678810

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053150.1 Chromosome 6N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable glucomannan 4-beta-mannosyltransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053150.1 Reference P.virgatum_v5 Primary Assembly

    Range
    39897839..39905971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039960387.1 → XP_039816321.1  probable glucomannan 4-beta-mannosyltransferase 11 isoform X1

    UniProtKB/TrEMBL
    A0A8T0R1J4
    Conserved Domains (1) summary
    cd06437
    Location:119 → 355
    CESA_CaSu_A2; Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

  2. XM_039960388.1 → XP_039816322.1  probable glucomannan 4-beta-mannosyltransferase 11 isoform X2

    UniProtKB/TrEMBL
    A0A8T0R1D2
    Conserved Domains (1) summary
    cl11394
    Location:1 → 186
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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