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LOC120675062 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120675062, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120675062
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like
Locus tag
PVAP13_5NG632023
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120675062 in Genome Data Viewer
Location:
chromosome: 5N
Exon count:
2
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 5N NC_053149.1 (64194896..64199187, complement)

Chromosome 5N - NC_053149.1Genomic Context describing neighboring genes Neighboring gene WUSCHEL-related homeobox 9-like Neighboring gene probable ubiquitin-like-specific protease 2A Neighboring gene uncharacterized LOC120676855 Neighboring gene uncharacterized LOC120676276

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053149.1 Chromosome 5N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053149.1 Reference P.virgatum_v5 Primary Assembly

    Range
    64194896..64199187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039956155.1 → XP_039812089.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A8T0S4V6
    Conserved Domains (2) summary
    cd02537
    Location:384 → 630
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
    PLN03108
    Location:1 → 50
    PLN03108; Rab family protein; Provisional
Nucleotide Protein Strain
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