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LOC120673146 sulfoquinovosyl transferase SQD2-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120673146, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120673146
Gene description
sulfoquinovosyl transferase SQD2-like
Locus tag
PVAP13_5NG071800
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120673146 in Genome Data Viewer
Location:
chromosome: 5N
Exon count:
11
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 5N NC_053149.1 (8327770..8331652, complement)

Chromosome 5N - NC_053149.1Genomic Context describing neighboring genes Neighboring gene transcription factor DIVARICATA-like Neighboring gene cytochrome P450 89A2-like Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene EKC/KEOPS complex subunit TPRKB-like Neighboring gene probable zinc metalloprotease EGY2, chloroplastic Neighboring gene polycystic kidney disease protein 1-like 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053149.1 Chromosome 5N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sulfoquinovosyl transferase SQD2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053149.1 Reference P.virgatum_v5 Primary Assembly

    Range
    8327770..8331652 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039953855.1 → XP_039809789.1  sulfoquinovosyl transferase SQD2-like

    UniProtKB/TrEMBL
    A0A8T0RLE9, A0A8T0SFH7
    Conserved Domains (1) summary
    PLN02871
    Location:10 → 433
    PLN02871; UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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