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LOC120666930 hydroxyproline O-galactosyltransferase GALT2-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120666930, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120666930
Gene description
hydroxyproline O-galactosyltransferase GALT2-like
Locus tag
PVAP13_3NG281700
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120666930 in Genome Data Viewer
Location:
chromosome: 3N
Exon count:
7
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 3N NC_053147.1 (67150178..67153649)

Chromosome 3N - NC_053147.1Genomic Context describing neighboring genes Neighboring gene probable indole-3-acetic acid-amido synthetase GH3.13 Neighboring gene uncharacterized LOC120668046 Neighboring gene mediator of RNA polymerase II transcription subunit 19a-like Neighboring gene phospholipase A1-Igamma1, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053147.1 Chromosome 3N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053147.1 Reference P.virgatum_v5 Primary Assembly

    Range
    67150178..67153649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039946921.1 → XP_039802855.1  hydroxyproline O-galactosyltransferase GALT2-like

    UniProtKB/TrEMBL
    A0A8T0UM41
    Conserved Domains (1) summary
    PLN03133
    Location:170 → 653
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein Strain
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