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LOC120661019 probable galacturonosyltransferase 4 [ Panicum virgatum (switchgrass) ]

Gene ID: 120661019, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120661019
Gene description
probable galacturonosyltransferase 4
Locus tag
PVAP13_2NG381300
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120661019 in Genome Data Viewer
Location:
chromosome: 2N
Exon count:
7
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 2N NC_053146.1 (50805750..50809654)

Chromosome 2N - NC_053146.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like Neighboring gene uncharacterized LOC120658893 Neighboring gene uncharacterized LOC120661020 Neighboring gene nuclear transcription factor Y subunit C-6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053146.1 Chromosome 2N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053146.1 Reference P.virgatum_v5 Primary Assembly

    Range
    50805750..50809654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039939703.1 → XP_039795637.1  probable galacturonosyltransferase 4

    UniProtKB/TrEMBL
    A0A8T0VM05, A0A8T0VR61
    Conserved Domains (1) summary
    PLN02829
    Location:185 → 705
    PLN02829; Probable galacturonosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

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