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LOC120657146 mediator of RNA polymerase II transcription subunit 23-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120657146, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120657146
Gene description
mediator of RNA polymerase II transcription subunit 23-like
Locus tag
PVAP13_1NG407200
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120657146 in Genome Data Viewer
Location:
chromosome: 1N
Exon count:
21
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 1N NC_053145.1 (59788217..59806961, complement)

Chromosome 1N - NC_053145.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 8c Neighboring gene transcription factor MYB20-like Neighboring gene GDSL esterase/lipase At5g37690-like Neighboring gene APO protein 2, chloroplastic-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053145.1 Chromosome 1N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 23-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053145.1 Reference P.virgatum_v5 Primary Assembly

    Range
    59788217..59806961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039935408.1 → XP_039791342.1  mediator of RNA polymerase II transcription subunit 23-like

    UniProtKB/TrEMBL
    A0A8T0WX21, A0A8T0X7D8
    Conserved Domains (1) summary
    pfam11573
    Location:739 → 1315
    Med23; Mediator complex subunit 23
Nucleotide Protein Strain
Heading Accession and Version

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