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LOC120656632 callose synthase 3-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120656632, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120656632
Gene description
callose synthase 3-like
Locus tag
PVAP13_1KG556900
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120656632 in Genome Data Viewer
Location:
chromosome: 1K
Exon count:
21
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 1K NC_053136.1 (56624191..56632976)

Chromosome 1K - NC_053136.1Genomic Context describing neighboring genes Neighboring gene monosaccharide-sensing protein 2-like Neighboring gene RING-H2 finger protein ATL80-like Neighboring gene outer envelope pore protein 21, chloroplastic-like Neighboring gene uncharacterized LOC120647293 Neighboring gene uncharacterized LOC120647308

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053136.1 Chromosome 1K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053136.1 Reference P.virgatum_v5 Primary Assembly

    Range
    56624191..56632976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039934796.1 → XP_039790730.1  callose synthase 3-like

    UniProtKB/TrEMBL
    A0A8T0Y078
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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