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LOC120655695 UDP-N-acetylglucosamine transferase subunit ALG13 homolog [ Panicum virgatum (switchgrass) ]

Gene ID: 120655695, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120655695
Gene description
UDP-N-acetylglucosamine transferase subunit ALG13 homolog
Locus tag
PVAP13_1NG242514
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120655695 in Genome Data Viewer
Location:
chromosome: 1N
Exon count:
4
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 1N NC_053145.1 (35508885..35511941)

Chromosome 1N - NC_053145.1Genomic Context describing neighboring genes Neighboring gene inositol-tetrakisphosphate 1-kinase 4-like Neighboring gene cytochrome P450 CYP73A100-like Neighboring gene uncharacterized LOC120655694 Neighboring gene pentatricopeptide repeat-containing protein At3g03580-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053145.1 Chromosome 1N Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dolichol-linked oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of UDP-N-acetylglucosamine transferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine transferase subunit ALG13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053145.1 Reference P.virgatum_v5 Primary Assembly

    Range
    35508885..35511941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039933642.1 → XP_039789576.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8T0XHJ1
    Conserved Domains (1) summary
    cl10013
    Location:2 → 102
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology

  2. XM_039933641.1 → XP_039789575.1  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8T0WP22, A0A8T0XHJ1
    Conserved Domains (1) summary
    cl10013
    Location:8 → 151
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
Nucleotide Protein Strain
Heading Accession and Version

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