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LOC120652882 digalactosyldiacylglycerol synthase 2, chloroplastic-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120652882, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120652882
Gene description
digalactosyldiacylglycerol synthase 2, chloroplastic-like
Locus tag
PVAP13_9KG499952
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120652882 in Genome Data Viewer
Location:
chromosome: 9K
Exon count:
5
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 9K NC_053144.1 (59730486..59735023)

Chromosome 9K - NC_053144.1Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C 30 Neighboring gene probable mannose-1-phosphate guanylyltransferase 1 Neighboring gene serine/threonine-protein kinase ATG1c-like Neighboring gene flagellar attachment zone protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053144.1 Chromosome 9K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables digalactosyldiacylglycerol synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
digalactosyldiacylglycerol synthase 2, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053144.1 Reference P.virgatum_v5 Primary Assembly

    Range
    59730486..59735023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039930818.1 → XP_039786752.1  digalactosyldiacylglycerol synthase 2, chloroplastic-like

    UniProtKB/TrEMBL
    A0A8T0NX52
    Conserved Domains (1) summary
    PLN02846
    Location:4 → 462
    PLN02846; digalactosyldiacylglycerol synthase

  2. XM_039930817.1 → XP_039786751.1  digalactosyldiacylglycerol synthase 2, chloroplastic-like

    UniProtKB/TrEMBL
    A0A8T0NX52
    Conserved Domains (1) summary
    PLN02846
    Location:4 → 462
    PLN02846; digalactosyldiacylglycerol synthase
Nucleotide Protein Strain
Heading Accession and Version

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