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LOC120651388 callose synthase 10-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120651388, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120651388
Gene description
callose synthase 10-like
Locus tag
PVAP13_9KG272800
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120651388 in Genome Data Viewer
Location:
chromosome: 9K
Exon count:
51
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 9K NC_053144.1 (40091106..40135927, complement)

Chromosome 9K - NC_053144.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 89A2-like Neighboring gene cytochrome P450 89A2-like Neighboring gene F-box protein At5g03970-like Neighboring gene uncharacterized LOC120651392

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053144.1 Chromosome 9K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 10-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053144.1 Reference P.virgatum_v5 Primary Assembly

    Range
    40091106..40135927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039928862.1 → XP_039784796.1  callose synthase 10-like

    UniProtKB/TrEMBL
    A0A8T0MUR3, A0A8T0NKE1
    Conserved Domains (2) summary
    pfam02364
    Location:1031 → 1775
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:355 → 465
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases