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LOC120650966 soluble starch synthase 2-1, chloroplastic/amyloplastic-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120650966, updated on 18-Sep-2024

Summary

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Gene symbol
LOC120650966
Gene description
soluble starch synthase 2-1, chloroplastic/amyloplastic-like
Locus tag
PVAP13_9KG205500
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120650966 in Genome Data Viewer
Location:
chromosome: 9K
Exon count:
9
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 9K NC_053144.1 (25366936..25378988, complement)

Chromosome 9K - NC_053144.1Genomic Context describing neighboring genes Neighboring gene 23.2 kDa heat shock protein-like Neighboring gene inactive protein RESTRICTED TEV MOVEMENT 2-like Neighboring gene universal stress protein YxiE-like Neighboring gene protein RRP6-like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053144.1 Chromosome 9K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 2-1, chloroplastic/amyloplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053144.1 Reference P.virgatum_v5 Primary Assembly

    Range
    25366936..25378988 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039928282.1 → XP_039784216.1  soluble starch synthase 2-1, chloroplastic/amyloplastic-like isoform X1

    UniProtKB/TrEMBL
    A0A8T0NHL8, A0A8T0NHT4
    Conserved Domains (1) summary
    TIGR02095
    Location:317 → 804
    glgA; glycogen/starch synthase, ADP-glucose type

  2. XM_039928283.1 → XP_039784217.1  soluble starch synthase 2-1, chloroplastic/amyloplastic-like isoform X2

    UniProtKB/TrEMBL
    A0A8T0NHT4, A0A8T0NKT5
    Conserved Domains (1) summary
    TIGR02095
    Location:292 → 779
    glgA; glycogen/starch synthase, ADP-glucose type
Nucleotide Protein Strain
Heading Accession and Version

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