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LOC120650863 xyloglucan galactosyltransferase KATAMARI1 homolog [ Panicum virgatum (switchgrass) ]

Gene ID: 120650863, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120650863
Gene description
xyloglucan galactosyltransferase KATAMARI1 homolog
Locus tag
PVAP13_9KG212485
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120650863 in Genome Data Viewer
Location:
chromosome: 9K
Exon count:
1
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 9K NC_053144.1 (23614805..23616841)

Chromosome 9K - NC_053144.1Genomic Context describing neighboring genes Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene uncharacterized LOC120650864 Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053144.1 Chromosome 9K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan galactosyltransferase KATAMARI1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053144.1 Reference P.virgatum_v5 Primary Assembly

    Range
    23614805..23616841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039928152.1 → XP_039784086.1  xyloglucan galactosyltransferase KATAMARI1 homolog

    UniProtKB/TrEMBL
    A0A8T0NH27
    Conserved Domains (1) summary
    pfam03016
    Location:87 → 426
    Exostosin; Exostosin family
Nucleotide Protein Strain
Heading Accession and Version

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