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LOC120648267 xyloglucan galactosyltransferase KATAMARI1 homolog [ Panicum virgatum (switchgrass) ]

Gene ID: 120648267, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120648267
Gene description
xyloglucan galactosyltransferase KATAMARI1 homolog
Locus tag
PVAP13_9KG584700
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120648267 in Genome Data Viewer
Location:
chromosome: 9K
Exon count:
2
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 9K NC_053144.1 (67712659..67714442, complement)

Chromosome 9K - NC_053144.1Genomic Context describing neighboring genes Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene uncharacterized LOC120647328 Neighboring gene uncharacterized LOC120647330 Neighboring gene dirigent protein 16-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053144.1 Chromosome 9K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan galactosyltransferase KATAMARI1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053144.1 Reference P.virgatum_v5 Primary Assembly

    Range
    67712659..67714442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039924993.1 → XP_039780927.1  xyloglucan galactosyltransferase KATAMARI1 homolog

    UniProtKB/TrEMBL
    A0A8T0N179, A0A8T0P832
    Conserved Domains (1) summary
    pfam03016
    Location:85 → 428
    Exostosin; Exostosin family
Nucleotide Protein Strain
Heading Accession and Version

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