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LOC120641840 soluble starch synthase 3a, chloroplastic/amyloplastic-like [ Panicum virgatum (switchgrass) ]

Gene ID: 120641840, updated on 18-Sep-2024

Summary

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Gene symbol
LOC120641840
Gene description
soluble starch synthase 3a, chloroplastic/amyloplastic-like
Locus tag
PVAP13_7KG392600
Gene type
protein coding
RefSeq status
MODEL
Organism
Panicum virgatum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes
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Genomic context

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See LOC120641840 in Genome Data Viewer
Location:
chromosome: 7K
Exon count:
17
Annotation release Status Assembly Chr Location
100 current P.virgatum_v5 (GCF_016808335.1) 7K NC_053142.1 (48012929..48021034, complement)

Chromosome 7K - NC_053142.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120641839 Neighboring gene uncharacterized LOC120643126 Neighboring gene formin-like protein 5 Neighboring gene uncharacterized LOC120641841

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053142.1 Chromosome 7K Reference P.virgatum_v5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 3a, chloroplastic/amyloplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panicum virgatum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.virgatum_v5 Primary Assembly

Genomic

  1. NC_053142.1 Reference P.virgatum_v5 Primary Assembly

    Range
    48012929..48021034 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039918121.1 → XP_039774055.1  soluble starch synthase 3a, chloroplastic/amyloplastic-like isoform X2

    UniProtKB/TrEMBL
    A0A8T0QN49, A0A8T0QPP7
    Conserved Domains (1) summary
    PLN02316
    Location:63 → 1186
    PLN02316; synthase/transferase

  2. XM_039918119.1 → XP_039774053.1  soluble starch synthase 3a, chloroplastic/amyloplastic-like isoform X1

    UniProtKB/TrEMBL
    A0A8T0QPP7
    Conserved Domains (1) summary
    PLN02316
    Location:63 → 1190
    PLN02316; synthase/transferase
Nucleotide Protein Strain
Heading Accession and Version

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