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CAPN3 calpain 3 [ Pteropus giganteus (Indian flying fox) ]

Gene ID: 120622749, updated on 30-Mar-2024

Summary

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Gene symbol
CAPN3
Gene description
calpain 3
See related
EnsemblRapid:ENSPGIG00000021033
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus giganteus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See CAPN3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current Ma_sr-lr_union100 (GCF_902729225.1) Unplaced Scaffold NW_024349801.1 (26955235..26998729, complement)

NW_024349801.1Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene zinc finger protein 106 Neighboring gene 5S ribosomal RNA Neighboring gene 5S ribosomal RNA Neighboring gene glucosidase alpha, neutral C Neighboring gene 5S ribosomal RNA Neighboring gene transmembrane protein 87A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024349801 Unplaced Scaffold Reference Ma_sr-lr_union100

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus giganteus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ma_sr-lr_union100

Genomic

  1. NW_024349801.1 Reference Ma_sr-lr_union100

    Range
    26955235..26998729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039888396.1 → XP_039744330.1  calpain-3 isoform X2

    Related
    ENSPGIP00000019463.1, ENSPGIT00000029623.1
    Conserved Domains (3) summary
    smart00230
    Location:61 → 377
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:379 → 536
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd16190
    Location:561 → 729
    EFh_PEF_CAPN3; Calcium-activated neutral

  2. XM_039888395.1 → XP_039744329.1  calpain-3 isoform X1

    Related
    ENSPGIP00000019408.1, ENSPGIT00000029546.1
    Conserved Domains (3) summary
    smart00230
    Location:61 → 425
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:427 → 584
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd16190
    Location:653 → 821
    EFh_PEF_CAPN3; Calcium-activated neutral
Nucleotide Protein
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